Kinematic Self-Replicating Machines

© 2004 Robert A. Freitas Jr. and Ralph C. Merkle. All Rights Reserved.

Robert A. Freitas Jr., Ralph C. Merkle, Kinematic Self-Replicating Machines, Landes Bioscience, Georgetown, TX, 2004.


 

References 1900-1999

1900. E. Saxon, C.R. Bertozzi, “Cell surface engineering by a modified Staudinger reaction,” Science 287(17 March 2000):2007-2010.

1901. K.J. Yarema, “New directions in carbohydrate engineering: a metabolic substrate-based approach to modify the cell surface display of sialic acids,” Biotechniques 31(August 2001):384-393.

1902. G. Stephanopoulos, “Metabolic engineering,” Curr. Opin. Biotechnol. 5(February 1994):196-200.

1903. D.C. Cameron, F.W. Chaplen, “Developments in metabolic engineering,” Curr. Opin. Biotechnol. 8(1 April 1997):175-180.

1904. J. Varner, D. Ramkrishna, “Metabolic engineering from a cybernetic perspective. 2. Qualitative investigation of nodal architectures and their response to genetic perturbation,” Biotechnol. Prog. 15(May 1999):426-438.

1905. B.N. Kholodenko, H.V. Westerhoff, J. Schwaber, M. Cascante, “Engineering a living cell to desired metabolite concentrations and fluxes: pathways with multifunctional enzymes,” Metab. Eng. 2(January 2000):1-13.

1906. R. Verpoorte, R. van der Heijden, J. Memelink, “Engineering the plant cell factory for secondary metabolite production,” Transgenic Res. 9(2000):323-43, 321 (discussion).

1907. D.E. Stafford, G. Stephanopoulos, “Metabolic engineering as an integrating platform for strain development,” Curr. Opin. Microbiol. 4(June 2001):336-340.

1908. N.P. Minton, M.L. Mauchline, M.J. Lemmon, J.K. Brehm, M. Fox, N.P. Michael, A. Giaccia, J.M. Brown, “Chemotherapeutic tumor targeting using clostridial spores,” FEMS Microbiol. Rev. 17(October 1995):357-364.

1909. M.T. Shata, L. Stevceva, S. Agwale, G.K. Lewis, D.M. Hone, “Recent advances with recombinant bacterial vaccine vectors,” Mol. Med. Today 6(February 2000):66-71.

1910. B. Drabner, C.A. Guzman, “Elicitation of predictable immune responses by using live bacterial vectors,” Biomol. Eng. 17(March 2001):75-82; E. Medina, C.A. Guzman, “Use of live bacterial vaccine vectors for antigen delivery: potential and limitations,” Vaccine 19(8 February 2001):1573-1580.

1911. A.L. Shiau, Y.L. Chen, C.Y. Liao, Y.S. Huang, C.L. Wu, “Prothymosin alpha enhances protective immune responses induced by oral DNA vaccination against pseudorabies delivered by Salmonella choleraesuis,” Vaccine 19(16 July 2001):3947-3956; A.L. Shiau, C.Y. Chu, W.C. Su, C.L. Wu, “Vaccination with the glycoprotein D gene of pseudorabies virus delivered by nonpathogenic Escherichia coli elicits protective immune responses,” Vaccine 19(30 April 2001):3277-3284.

1912. M. Hense, E. Domann, S. Krusch, P. Wachholz, K.E. Dittmar, M. Rohde, J. Wehland, T. Chakraborty, S. Weiss, “Eukaryotic expression plasmid transfer from the intracellular bacterium Listeria monocytogenes to host cells,” Cell Microbiol. 3(September 2001):599-609; S. Weiss, T. Chakraborty, “Transfer of eukaryotic expression plasmids to mammalian host cells by bacterial carriers,” Curr. Opin. Biotechnol. 12(October 2001):467-472; S. Weiss, S. Krusch, “Bacteria-mediated transfer of eukaryotic expression plasmids into mammalian host cells,” Biol. Chem. 382(April 2001):533-541; A. Darji, S. zur Lage, A.I. Garbe, T. Chakraborty, S. Weiss, “Oral delivery of DNA vaccines using attenuated Salmonella typhimurium as carrier,” FEMS Immunol. Med. Microbiol. 27(April 2000):341-349.

1913. I. Gentschev, G. Dietrich, S. Spreng, S. Pilgrim, J. Stritzker, A. Kolb-Maurer, W. Goebel, “Delivery of protein antigens and DNA by attenuated intracellular bacteria,” Int. J. Med. Microbiol. 291(February 2002):577-582; H. Mollenkopf, G. Dietrich, S.H. Kaufmann, “Intracellular bacteria as targets and carriers for vaccination,” Biol. Chem. 382(April 2001):521-532; G. Dietrich, A. Kolb-Maurer, S. Spreng, M. Schartl, W. Goebel, I. Gentschev, “Gram-positive and Gram-negative bacteria as carrier systems for DNA vaccines,” Vaccine 19(21 March 2001):2506-2512; G. Dietrich, W. Goebel, “DNA vaccine delivery by attenuated intracellular bacteria,” Subcell. Biochem. 33(2000):541-557; G. Dietrich, “Current status and future perspectives of DNA vaccine delivery by attenuated intracellular bacteria,” Arch. Immunol. Ther. Exp. (Warsz) 48(2000):177-182; G. Dietrich, S. Spreng, I. Gentschev, W. Goebel, “Bacterial systems for the delivery of eukaryotic antigen expression vectors,” Antisense Nucleic Acid Drug Dev. 10(October 2000):391-399; I. Gentschev, G. Dietrich, S. Spreng, A. Kolb-Maurer, J. Daniels, J. Hess, S.H. Kaufmann, W. Goebel, “Delivery of protein antigens and DNA by virulence-attenuated strains of Salmonella typhimurium and Listeria monocytogenes,” J. Biotechnol. 83(29 September 2000):19-26; G. Dietrich, A. Bubert, I. Gentschev, Z. Sokolovic, A. Simm, A. Catic, S.H. Kaufmann, J. Hess, A.A. Szalay, W. Goebel, “Delivery of antigen-encoding plasmid DNA into the cytosol of macrophages by attenuated suicide Listeria monocytogenes,” Nat. Biotechnol. 16(February 1998):181-5, 138-139 (comment).

1914. S.C. Liu, N.P. Minton, A.J. Giaccia, J.M. Brown, “Anticancer efficacy of systemically delivered anaerobic bacteria as gene therapy vectors targeting tumor hypoxia/necrosis,” Gene Ther. 9(February 2002):291-296; M.J. Lemmon, P. van Zijl, M.E. Fox, M.L. Mauchline, A.J. Giaccia, N.P. Minton, J.M. Brown, “Anaerobic bacteria as a gene delivery system that is controlled by the tumor microenvironment,” Gene Ther. 4(August 1997):791-796; M.E. Fox, M.J. Lemmon, M.L. Mauchline, T.O. Davis, A.J. Giaccia, N.P. Minton, J.M. Brown, “Anaerobic bacteria as a delivery system for cancer gene therapy: in vitro activation of 5-fluorocytosine by genetically engineered clostridia,” Gene Ther. 3(February 1996):173-178, 3(August 1996):741 (erratum).

1915. S. Nuyts, L. Van Mellaert, J. Theys, W. Landuyt, P. Lambin, J. Anne, “Clostridium spores for tumor-specific drug delivery,” Anticancer Drugs 13(February 2002):115-125.

1916. C. Grillot-Courvalin, S. Goussard, P. Courvalin, “Wild-type intracellular bacteria deliver DNA into mammalian cells,” Cell Microbiol. 4(March 2002):177-186; C. Grillot-Courvalin, S. Goussard, P. Courvalin, “Bacteria as gene delivery vectors for mammalian cells,” Curr. Opin. Biotechnol. 10(October 1999):477-481; P. Courvalin, S. Goussard, C. Grillot-Courvalin, “Gene transfer from bacteria to mammalian cells,” C. R. Acad. Sci. III 318(December 1995):1207-1212.

1917. M. Fujimori, J. Amano, S. Taniguchi, “The genus Bifidobacterium for cancer gene therapy,” Curr. Opin. Drug Discov. Devel. 5(March 2002):200-203; K. Yazawa, M. Fujimori, J. Amano, Y. Kano, S. Taniguchi, “Bifidobacterium longum as a delivery system for cancer gene therapy: selective localization and growth in hypoxic tumors,” Cancer Gene Ther. 7(February 2000):269-274.

1918. D. Bermudes, L.M. Zheng, I.C. King, “Live bacteria as anticancer agents and tumor-selective protein delivery vectors,” Curr. Opin. Drug Discov. Devel. 5(March 2002):194-199; X. Luo, Z. Li, S. Lin, T. Le, M. Ittensohn, D. Bermudes, J.D. Runyab, S.Y. Shen, J. Chen, I.C. King, L.M. Zheng, “Antitumor effect of VNP20009, an attenuated Salmonella, in murine tumor models,” Oncol. Res. 12(2001):501-508; J. Tjuvajev, R. Blasberg, X. Luo, L.M. Zheng, I. King, D. Bermudes, “Salmonella-based tumor-targeted cancer therapy: tumor amplified protein expression therapy (TAPET) for diagnostic imaging,” J. Control Release 74(6 July 2001):313-315; D. Bermudes, B. Low, J. Pawelek, “Tumor-targeted Salmonella. Highly selective delivery vectors,” Adv. Exp. Med. Biol. 465(2000):57-63; L.M. Zheng, X. Luo, M. Feng, Z. Li, T. Le, M. Ittensohn, M. Trailsmith, D. Bermudes, S.L. Lin, I.C. King, “Tumor amplified protein expression therapy: Salmonella as a tumor-selective protein delivery vector,” Oncol. Res. 12(2000):127-135; M. Sznol, S.L. Lin, D. Bermudes, L.M. Zheng, I. King, “Use of preferentially replicating bacteria for the treatment of cancer,” J. Clin. Invest. 105(April 2000):1027-1030; http://www.jci.org/cgi/content/full/105/8/1027

1919. L. Wang, P.G. Schultz, “Expanding the genetic code,” Chem. Commun. (Camb.) (7 January 2002):1-11.

1920. J.W. Chin, S.W. Santoro, A.B. Martin, D.S. King, L. Wang, P.G. Schultz, “Addition of p-azido-L-phenylalanine to the genetic code of Escherichia coli,” J. Am. Chem. Soc. 124(7 August 2002):9026-9027.

1921. J.W. Chin, A.B. Martin, D.S. King, L. Wang, P.G. Schultz, “Addition of a photocrosslinking amino acid to the genetic code of Escherichia coli,” Proc. Natl. Acad. Sci. (USA) 99(20 August 2002):11020-11024; http://www.pnas.org/cgi/content/full/99/17/11020

1922. L. Wang, A. Brock, B. Herberich, P.G. Schultz, “Expanding the genetic code of Escherichia coli,” Science 292(20 April 2001):498-500, 453-454 (comment).

1923. L. Wang, A. Brock, P.G. Schultz, “Adding L-3-(2-naphthyl)alanine to the genetic code of E. coli,” J. Am. Chem. Soc. 124(6 March 2002):1836-1837.

1924. L. Wang, Z. Zhang, A. Brock, P.G. Schultz, “Addition of the keto functional group to the genetic code of Escherichia coli,” Proc. Natl. Acad. Sci. (USA) 100(7 January 2003):56-61; http://www.pnas.org/cgi/content/full/100/1/56

1925. Z. Zhang, L. Wang, A. Brock, P.G. Schultz, “The selective incorporation of alkenes into proteins in Escherichia coli,” Angew. Chem. Int. Ed. Engl. 41(2 August 2002):2840-2842.

1926. R.A. Mehl, J.C. Anderson, S.W. Santoro, L. Wang, A.B. Martin, D.S. King, D.M. Horn, P.G. Schultz, “Generation of a bacterium with a 21 amino acid genetic code,” J. Am. Chem. Soc. 125(29 January 2003):935-939. See also: Robert F. Service, “New bug uses strange chemistry,” ScienceNow, 29 January 2003; http://sciencenow.sciencemag.org/cgi/content/full/2003/129/3?etoc

1927. S.W. Santoro, J.C. Anderson, V. Lakshman, P.G. Schultz, “An archaebacteria-derived glutamyl-tRNA synthetase and tRNA pair for unnatural amino acid mutagenesis of proteins in Escherichia coli,” Nucleic Acids Res. 31(1 December 2003):6700-6709.

1928. Jason W. Chin, T. Ashton Cropp, J. Christopher Anderson, Mridul Mukherji, Zhiwen Zhang, Peter G. Schultz, “An Expanded Eukaryotic Genetic Code,” Science 301(15 August 2003):964-967.

1929. A. Deiters, T.A. Cropp, M. Mukherji, J.W. Chin, J.C. Anderson, P.G. Schultz, “Adding amino acids with novel reactivity to the genetic code of Saccharomyces cerevisiae,” J. Am. Chem. Soc. 125(1 October 2003):11782-11783.

1930. Joseph Jacobson, “Self Replicating Systems,” PowerPoint presentation, 2002; http://cba.media.mit.edu/events/02.10.emergent/jacobson.ppt

1931. Bede M. Broome, Michael H. Hecht, “Nature disfavors sequences of alternating polar and non-polar amino acids: implications for amyloidogenesis,” J. Mol. Biol. 296(2000):961-968; http://www.princeton.edu/~hecht/pub/jmb00.pdf. See also: Michael H. Hecht, “Research Summary,” 2003; http://www.princeton.edu/~hecht/research.html

1932. P.M. Burgers, “Eukaryotic DNA polymerases in DNA replication and DNA repair,” Chromosoma 107(September 1998):218-227.

1933. A. Tissier, E.G. Frank, J.P. McDonald, S. Iwai, F. Hanaoka, R. Woodgate, “Misinsertion and bypass of thymine-thymine dimers by human DNA polymerase iota,” EMBO J. 19(2 October 2000):5259-5266; http://emboj.oupjournals.org/cgi/content/full/19/19/5259

1934. S.S. Parikh, C.D. Mol, D.J. Hosfield, J.A. Tainer, “Envisioning the molecular choreography of DNA base excision repair,” Curr. Opin. Struct. Biol. 9(1999):37-47.

1935. Galina Obmolova, Changill Ban, Peggy Hsieh, Wei Yang, “Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA,” Nature 407(12 October 2000):703-710; W. Yang, “Structure and function of mismatch repair proteins,” Mutat. Res. 460(2000):245-256.

1936. T.K. Sixma, “DNA mismatch repair: MutS structures bound to mismatches,” Curr. Opin. Struct. Biol. 11(2001):47-52.

1937. J. Kyte, R.F. Doolittle, “A simple method for displaying the hydropathic character of a protein,” J. Mol. Biol. 157(5 May 1982):105-132.

1938. M.J. Daly, O. Ling, K.W. Minton, “Interplasmidic recombination following irradiation of the radioresistant bacterium Deinococcus radiodurans,” J. Bacteriol. 176(December 1994):7506-7515.

1939. K.S. Makarova, L. Aravind, Y.I. Wolf, R.L. Tatusov, K.W. Minton, E.V. Koonin, M.J. Daly, “Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics,” Microbiol. Mol. Biol. Rev. 65(March 2001):44-79; http://mmbr.asm.org/cgi/content/full/65/1/44?view=full&pmid=11238985. See also: “The World’s Toughest Microbe,” Office of Science, U.S. Department of Energy, March 2001;
http://www.er.doe.gov/Sub/Accomplishments/Decades_Discovery/76.html

1940. Michael G. Kaplitt, Arthur D. Loewy, eds., Viral Vectors: Gene Therapy and Neuroscience Applications, Second Edition, Academic Press, New York, 1997.

1941. Angel Cid-Arregui, Alejandro Garcia-Carranca, eds., Viral Vectors: Basic Science and Gene Therapy, Eaton Publishing Co., 2000.

1942. Curtis A. MacHida, ed., Viral Vectors for Gene Therapy: Methods and Protocols, Humana Press, 2002.

1943. S. El Mehdaoui, A. Touze, S. Laurent, P.Y. Sizaret, D. Rasschaert, P. Coursaget, “Gene transfer using recombinant rabbit hemorrhagic disease virus capsids with genetically modified DNA encapsidation capacity by addition of packaging sequences from the L1 or L2 protein of human papillomavirus type 16,” J. Virol. 74(November 2000):10332-10340; http://jvi.asm.org/cgi/content/full/74/22/10332

1944. D. Endy, L. You, J. Yin, I.J. Molineux, “Computation, prediction, and experimental tests of fitness for bacteriophage T7 mutants with permuted genomes,” Proc. Natl. Acad. Sci. (USA) 97(9 May 2000):5375-5380; http://www.pnas.org/cgi/content/full/97/10/5375

1945. D. Endy, R. Brent, “Modelling cellular behavior,” Nature 409(18 January 2001):391-395.

1946. F.W. Studier, “Relationships among different strains of T7 and among T7-related bacteriophages,” Virology 95(May 1979):70-84.

1947. J. Yin, “Evolution of bacteriophage T7 in a growing plaque,” J. Bacteriol. 175(March 1993):1272-1277.

1948. D. Kong, J. Yin, “Whole-virus vaccine development by continuous culture on a complementing host,” Biotechnology (NY) 13(June 1995):583-586.

1949. Jeronimo Cello, Aniko V. Paul, Eckard Wimmer, “Chemical synthesis of poliovirus cDNA: Generation of infectious virus in the absence of natural template,” Science 297(9 August 2002):1016-1018, http://www.sciencemag.org/cgi/content/full/1072266/DC1; Robin Orwant, “Scientists build polio virus from scratch,” NewScientist.com, 11 July 2002; http://www.newscientist.com/news/news.jsp?id=ns99992539; Andrew Pollack, “Scientists create a live polio virus,” The New York Times, 12 July 2002; http://www.nytimes.com/2002/07/12/science/12POLI.html

1950. D. Enshell-Seijffers, L. Smelyanski, J.M. Gershoni, “The rational design of a ‘type 88’ genetically stable peptide display vector in the filamentous bacteriophage fd,” Nucleic Acids Res. 29(15 May 2001):1-13; http://nar.oupjournals.org/cgi/content/full/29/10/e50 or http://nar.oupjournals.org/cgi/reprint/29/10/e50.pdf

1951. B. Dietzschold, M.J. Schnell, “New approaches to the development of live attenuated rabies vaccines,” Hybrid Hybridomics 21(April 2002):129-134.

1952. K.J. Lee, J.C. de la Torre, “Reverse genetics of arenaviruses,” Curr. Top. Microbiol. Immunol. 262(2002):175-193; D.F. Hudson, C. Morrison, S. Ruchaud, W.C. Earnshaw, “Reverse genetics of essential genes in tissue-culture cells: ‘dead cells talking’,” Trends Cell Biol. 12(June 2002):281-287.

1953. S. Zhao, “A comprehensive BAC resource,” Nucleic Acids Res. 29(1 January 2001):141-143.

1954. H. Shizuya, H. Kouros-Mehr, “The development and applications of the bacterial artificial chromosome cloning system,” Keio J. Med. 50(March 2001):26-30; H. Shizuya, B. Birren, U.J. Kim, V. Mancino, T. Slepak, Y. Tachiiri, M. Simon, “Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector,” Proc. Natl. Acad. Sci. (USA) 89(15 September 1992):8794-8797.

1955. P. Giraldo, L. Montoliu, “Size matters: use of YACs, BACs and PACs in transgenic animals,” Transgenic Res. 10(April 2001):83-103.

1956. A.W. Higgins, M.G. Schueler, H.F. Willard, “Chromosome engineering: generation of mono- and dicentric isochromosomes in a somatic cell hybrid system,” Chromosoma 108(August 1999):256-265.

1957. B. Grimes, H. Cooke, “Engineering mammalian chromosomes,” Hum. Mol. Genet. 7(1998):1635-1640.

1958. J.E. Mejia, A. Willmott, E. Levy, W.C. Earnshaw, Z. Larin, “Functional complementation of a genetic deficiency with human artificial chromosomes,” Am. J. Hum. Genet. 69(August 2001):315-326.

1959. Steen Rasmussen, Liaohai Chen, Martin Nilsson, Shigeaki Abe, “Bridging nonliving and living matter,” Artif. Life 9(Summer 2003):269-316.

1960. J. Shi, D.E. Bergstrom, “Assembly of novel DNA cycles with rigid tetrahedral linkers,” Angew. Chem. Int. Ed. Engl. 36(1997):111-113.

1961. Bruce Smith, Markus Krummenacker, “DNA-guided assembly of proteins as a pathway to an assembler,” paper presented at the 1997 Albany Conference on Biomolecular Motors and Nanomachines; see abstract at: http://www.wadsworth.org/albcon97/abstract/krummena.htm

1962. James B. Lewis, Bruce Smith, Markus Krummenacker, “A Proposed Path from Current Biotechnology to a Replicating Assembler,” Molecubotics, Inc., November 1996; http://www.molecubotics.com/tech-docs/dgap.html

1963. Molecubotics, Inc.; http://www.molecubotics.com/info.html

1964. Bruce Smith, Markus Krummenacker, Jim Lewis, “Constructing a Biotech Assembler: Roadmap and Milestones,” Molecubotics, Inc., Version 0.8, 8 November 2000; http://www.molecubotics.com/tech-docs/asm-roadmap-0.7.html. See also: “Biotech as the Fastest Pathway to an Assembler,” Molecubotics, Inc., 25 February 2001; http://www.molecubotics.com/tech-docs/biotech-pathway.html

1965. Gavin D. Meredith, Hayley Wu, Nancy Allbritton, “Novel chemical strategy to link protein to DNA for directed molecular assembly,” 11th Foresight Conference on Molecular Nanotechnology, Palo Alto, CA, 9-12 October 2003; http://www.foresight.org/Conferences/MNT11/Abstracts/Meredith/index.html

1966. E. Braun, Y. Eichen, U. Silvan, G. Ben-Yoseph, “DNA-templated assembly and electrode attachment of a conducting silver wire,” Nature 391(19 February 1998):775-778.

1967. J.K.N Mbindyo, B.D. Reiss, B.R. Martin, D.J. Dermody, M.J. Natan, Thomas E. Mallouk, “DNA-directed assembly of gold nanowires on complementary surfaces,” Advanced Materials 13(2001):249-254.

1968. Erik Dujardin, Long-Bao Hsin, C.R. Chris Wang, Stephen Mann, “DNA-driven self-assembly of gold nanorods,” Chem. Commun. (2001):1264-1265.

1969. John H. Reif, Thomas H. LaBean, Nadrian C. Seeman, “Challenges and applications for self-assembled DNA nanostructures,” Proc. Sixth International Workshop on DNA-Based Computers, Leiden, The Netherlands, June 2000, in A. Condon, G. Rozenberg, eds., DIMACS Series in Discrete Mathematics and Theoretical Computer Science, Lecture Notes in Computer Science, Springer-Verlag, Berlin Heidelberg, vol. 2054, 2001, pp. 173-198; http://www.cs.duke.edu/~reif/paper/SELFASSEMBLE/selfassemble.pdf

1970. B.R. Martin, D.J. Dermody, B.D. Reiss, M. Fang, L.A. Lyon, M.J. Natan, T.E. Mallouk, “Orthogonal self-assembly on colloidal Au-Pt nanorods,” Adv. Mater. 11(1999):1021-1025.

1971. Jan Richter, Michael Mertig, Wolfgang Pompe, Ingolf Monch, Hans K. Schackert, “Construction of highly conductive nanowires on a DNA template,” Appl. Phys. Lett. 78(22 January 2001):536-538; http://www.biophysik.physik.uni-muenchen.de/staff/PetrasWebpage/pdf-Files/Richter.pdf

1972. Yu Huang, Xiangfeng Duan, Yi Cui, Lincoln J. Lauhon, Kyoung-Ha Kim, Charles M. Lieber, “Logic gates and computation from assembled nanowire building blocks,” Science 294(9 November 2001):1313-1317.

1973. B.D. Reiss, J.K.N. Mbindyo, B.R. Martin, S.R. Nicewarner, T.E. Mallouk, M.J. Natan, C.D. Keating, “DNA-directed assembly of anisotropic nanoparticles on lithographically defined surfaces and in solution,” MRS Symp. Proc. 635(2001):C6.2.1-C6.2.6.

1974. Chris Dwyer, Russell Taylor, Richard Superfine, Sean Washburn, Dorothy Erie, “Methodology for the DNA-guided self assembly of novel computing circuitry,” paper presented at the 10th Foresight Conference on Molecular Nanotechnology, October 2002; http://www.foresight.org/Conferences/MNT10/Abstracts/Dwyer/index.html (abstract)

1975. John Reif, Hao Yan, Thomas H. LaBean, Liping Feng, “Directed Nucleation Assembly of DNA Tile Complexes for Barcode-Patterned Lattices,” Proc. Nat. Acad. Sci. (USA) (23 June 2003); http://www.trnmag.com/Stories/2003/070203/DNA_makes_nano_barcode_070203.html

1976. Larry W. McLaughlin, Kristen M. Stewart, “Synthesis and Self-Assembly of Metal-Centered DNA Lattices,” 11th Foresight Conference on Molecular Nanotechnology, Palo Alto, CA, 9-12 October 2003; http://www.foresight.org/Conferences/MNT11/Abstracts/McLaughlin/index.html

1977. M.G. Warner, J.E. Hutchison, “Linear assemblies of nanoparticles electrostatically organized on DNA scaffolds,” Nat. Mater. 2(April 2003):272-7, 214-215 (comment).

1978. A.P. Alivisatos, K.P. Johnsson, X. Peng, T.E. Wilson, C.J. Loweth, M.P. Bruchez Jr., P.G. Schultz, “Organization of ‘nanocrystal molecules’ using DNA,” Nature 382(15 August 1996):609-611, 581 (comment).

1979. H. Xin, A.T. Woolley, “DNA-templated nanotube localization,” J. Am. Chem. Soc. 125(23 July 2003):8710-8711.

1980. A.M Cassell, W.A. Scrivens, J.M. Tour, “Assembly of DNA/fullerene hybrid materials,” Angew. Chem. Int. Ed. Engl. 37(1998):1528-1531.

1981. C.A. Mirkin, R.L. Letsinger, R.C. Mucic, J.J.A. Storhoff, “A DNA-based method for rationally assembling nanoparticles into macroscopic materials,” Nature 382(15 August 1996):607-609.

1982. C.J. Loweth, W.B. Caldwell, X.G. Peng, A.P. Alivisatos, P.G. Schultz, “DNA-based assembly of gold nanocrystals,” Angew. Chem. Intl. Ed. 38(December 1999):1808-1812; http://www3.interscience.wiley.com/cgi-bin/fulltext?ID=62000783&PLACEBO=IE.pdf

1983. J.M. Perez, T. O’Loughin, F.J. Simeone, R. Weissleder, L. Josephson, “DNA-based magnetic nanoparticle assembly acts as a magnetic relaxation nanoswitch allowing screening of DNA-cleaving agents,” J. Am. Chem. Soc. 124(27 March 2002):2856-2857.

1984. Kentaro Tanaka, Atsushi Tengeiji, Tatsuhisa Kato, Namiki Toyama, Mitsuhiko Shionoya, “A discrete self-assembled metal array in artificial DNA,” Science 299(21 February 2003):1212-1213.

1985. R. Bashir, “DNA-mediated artificial nanobiostructures: state of the art and future directions,” Superlattices Microstruct. 29(January 2001):1-16; http://www.sciencedirect.com/science/article/B6WXB-45BBY69-1J/1/50a5c274d3b5b6f1304e6979de569b8e

1986. C. Park, J.L Campbell, W.A. Goddard III, “Protein stitchery: Design of a protein for selective binding to a specific DNA sequence,” Proc. Natl. Acad. Sci. USA 89(1 October 1992):9094-9096.

1987. Kinneret Keren, Rotem S. Berman, Evgeny Buchstab, Uri Sivan, Erez Braun, “DNA-templated carbon nanotube field-effect transistor,” Science 302(21 November 2003):1380-1382, 1310 (comment). See also: “DNA used to create self-assembling nano transistor,” ISRAEL21c, 23 November 2003; http://www.israel21c.org/bin/en.jsp?enPage=BlankPage&enDisplay=view&enDispWhat=object&enDispWho=Articles%5el557&enZone=Technology&enVersion=0&

1988. M. Zheng, A. Jagota, M.S. Strano, A.P. Santos, P. Barone, S.G. Chou, B.A. Diner, M.S. Dresselhaus, R.S. McLean, G.B. Onoa, G.G. Samsonidze, E.D. Semke, M. Usrey, D.J. Walls, “Structure-based carbon nanotube sorting by sequence-dependent DNA assembly,” Science 302(28 November 2003):1545-1548. See also: M. Zheng, A. Jagota, E.D. Semke, B.A. Diner, R.S. McLean, S.R. Lustig, R.E. Richardson, N.G. Tassi, “DNA-assisted dispersion and separation of carbon nanotubes,” Nat. Mater. 2(May 2003):338-342.

1989. Matthew Cook, Paul W.K. Rothemund, Erik Winfree, “Self-assembled circuit patterns,” DNA Computers 9 (http://analytical.chem.wisc.edu/DNA9/), Lecture Notes in Computer Science (LNCS) 2568, 1-4 June 2003; http://www.dna.caltech.edu/Papers/SAcircuits_DNA9.pdf

1990. S. Xiao, F. Liu, A.E. Rosen, J.F. Hainfeld, N.C. Seeman, K. Musier-Forsyth, Richard A. Kiehl, “Self-assembly of metallic nanoparticle arrays by DNA scaffolding,” J. Nanoparticle Res. 4(2002):313-317.

1991. Nadrian C. Seeman, William Goddard, Nagarajan Vaidehi, Erik Winfree, “DNA based nanomechanical devices,” NSF NIRT Grant 0103002, NSF Nanoscale Science and Engineering Grantees Conference, 11-13 December 2002; http://www-unix.oit.umass.edu/~nano/NewFiles/Over05_NYU.pdf

1992. Erik Winfree, “Simulations of computing by self-assembly,” 31 May 1998; http://cba.mit.edu/events/03.11.ASE/docs/Winfree.1.pdf

1993. Thomas H. LaBean, Erik Winfree, John H. Reif, “Experimental progress in computation by self-assembly of DNA tilings,” DNA Based Computers 5 (http://psrg.lcs.mit.edu/dna5/), DIMACS 54, 1999, pp. 123-140; http://www.dna.caltech.edu/Papers/LaBeanTX.ps

1994. Erik Winfree, “Algorithmic self-assembly of DNA: Theoretical motivations and 2-D assembly experiments,” J. Biomolecular Struct. Dynam. 11(2000):263-270; http://www.dna.caltech.edu/Papers/algSA_JBSD.pdf

1995. Erik Winfree, Tony Eng, Grzegorz Rozenberg, “Strong tile models for DNA computing by self-assembly,” DNA Based Computers 6 (http://lcnc.nl/dna6/), Lecture Notes in Computer Science (LNCS) 2054, 2001, pp. 63-88; http://www.dna.caltech.edu/Papers/stringtiles.pdf

1996. Rebecca Schulman, Shaun Lee, Nick Papadakis, Erik Winfree, “One dimensional boundaries for DNA tile self-assembly,” DNA Computers 9 (http://analytical.chem.wisc.edu/DNA9/), Lecture Notes in Computer Science (LNCS) 2568, 1-4 June 2003; http://www.dna.caltech.edu/Papers/OneDimBoundaries_DNA9.pdf

1997. Erik Winfree, Renat Bekbolatov, “Proofreading tile sets: Error correction for algorithmic self-assembly,” DNA Computers 9 (http://analytical.chem.wisc.edu/DNA9/), Lecture Notes in Computer Science (LNCS) 2568, 1-4 June 2003; http://www.dna.caltech.edu/Papers/proofreading_DNA9.pdf

1998. Nadrian C. Seeman, “Structural DNA nanotechnology,” paper presented at the 10th Foresight Conference on Molecular Nanotechnology, October 2002; http://www.foresight.org/Conferences/MNT10/Abstracts/Seeman/index.html (abstract)

1999. Nadrian C. Seeman, “DNA nanotechnology: Life’s central performer in a new role,” The Biological Physicist 2(1 April 2002):2-6; http://www.aps.org/DBP/newsletter/apr02.pdf; Nadrian C. Seeman, “Nanotechnology,” Materials Today, January 2003, pp. 24-29; http://www.materialstoday.com/pdfs_6_1/seeman.pdf

 


Last updated on 1 August 2005